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Characterization of molecular processes involved in the pearl formation in Pinctada margaritifera for a sustainable development of pearl farming industry in French Polynesia ArchiMer
Gueguen, Yannick; Montagnani, Caroline; Joubert, Caroline; Marie, Benjamin; Belliard, Corinne; Tayale, Alexandre; Fievet, Julie; Levy, Peva; Piquemal, David; Marin, Frederic; Le Moullac, Gilles; Ky, Chin-long; Garen, Pierre; Lo, Cedrick; Saulnier, Denis.
Tahiti’s pearl farming industry plays a major socio-economic role in French Polynesia. In an increasingly competitive market where the production of high quality pearls becomes essential, research can help secure and ensure sustainable production. In that context, Ifremer, in close collaboration with the “direction des resources marines” (French Polynesian government agency) has developed research projects on the “sustainable development of pearl farming”. This program is organized along 3 axes: (1) understanding the animal physiology and initiating a genetically selective breeding program of donor oysters; (2) understanding pearl oyster larvae dispersal and recruitment; (3) understanding the molecular mechanisms underlying biomineralization processes...
Tipo: Text Palavras-chave: Pearl oyster; Biomineralization; Pinctada margaritifera.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00167/27840/26049.pdf
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Relationship of the orange tissue morphotype with shell and pearl colouration in the mollusc Pinctada margaritifera ArchiMer
Ky, Chin-long; Blay, Carole; Broustal, Floriane; Sham Koua, Manaarii; Planes, Serge.
Molluscs display a vast range of shell colours both between and within species. However, only a few species show colour variation in their soft tissues. In French Polynesia, the pearl oyster Pinctada margaritifera has three tissue morphotypes: the black wild-type and two rare mutations: white albino and orange mantle. Phenotypic transmission is known to occur from these phenotypes when they are used as graft donors for pearl production, leading to multicoloured and white pearls from black and albino mantle grafts, respectively. The present study furthers this knowledge by examining the phenotypic association between the orange mantle tissue morphotype and hard tissues: shells and cultured pearls. Based on a large experimental graft, shell colour...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00486/59760/62878.pdf
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Potential combinations of mabé, keshi and cultured pearl production from colourful hatchery-produced Pinctada margaritifera ArchiMer
Ky, Chin-long; Leclerc, Nicolas; Broustal, Floriane; Nakasai, Seiji; Devaux, Dominique.
Aquaculture of nacreous gems, such as cultured pearls, mabé or keshi, is done mostly using different mollusc species grown in countries of the Indo-Pacific region. To date, no single species has been exploited for the simultaneous generation of more than one of these bioproducts, but all require animals with colourful shells. Historically, Pinctada species have mainly been used for nucleated pearl production, selecting the rarer colourful individuals to be used as graft donors. By contrast, colourful Pteria species have mostly been used for mabé production, as the grafting operation for pearl production is associated with low yield. In this study, we report the potential for cumulating cultured pearl and mabé (MP), or keshi and mabé (MK) production, using...
Tipo: Text Palavras-chave: Pearl oyster; Pinctada margaritifera; Mabe; Keshi; Pearls.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00482/59398/62168.pdf
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Evidence of donor effect on cultured pearl quality from a duplicated grafting experiment on Pinctada margaritifera using wild donors ArchiMer
Tayale, Alexandre; Gueguen, Yannick; Treguier, Cathy; Le Grand, Jacqueline; Cochennec-laureau, Nathalie; Montagnani, Caroline; Ky, Chin-long.
Producing high quality cultured black pearls from Pinctada margaritifera is one of the major challenges for the "pearl oyster" industry in French Polynesia. In order to assess donor effect on cultured pearl quality, wild Pinctada margaritifera originating from the Tuamotu Archipelago were used in a duplicated grafting experiment. After 12 months of culture, nucleus retention was assessed and seven pearl quality traits recorded on the 454 cultured pearls harvested from the experiment. The traits scored were nacre thickness and pearl weight, surface defects, lustre, grade, and the colour components: 1) darkness of cultured pearl colour, and 2) visual perception of colour class (bodycolor and/or overtone). Our results demonstrate for the first time that...
Tipo: Text Palavras-chave: Cultured pearl oyster; Pearl quality; Nacre; Donor mollusc; Genetic selection; Pteriidae; Blacklip pearl oyster; Pinctada margaritifera; French Polynesia.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00116/22757/20541.pdf
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Tracing key genes associated with the Pinctada margaritifera albino phenotype from juvenile to cultured pearl harvest stages using multiple whole transcriptome sequencing ArchiMer
Auffret, Pauline; Le Luyer, Jeremy; Sham Koua, Manaarii; Quillien, Virgile; Ky, Chin-long.
Background Albino mutations are commonly observed in the animal kingdom, including in bivalves. In the black-lipped pearl oyster Pinctada margaritifera, albino specimens are characterized by total or partial absence of colouration resulting in typical white shell phenotype expression. The relationship of shell colour with resulting cultured pearl colour is of great economic interest in P. margaritifera, on which a pearl industry is based. Hence, the albino phenotype provides a useful way to examine the molecular mechanisms underlying pigmentation. Results Whole transcriptome RNA-sequencing analysis comparing albino and black wild-type phenotypes at three stages over the culture cycle of P. margaritifera revealed a total of 1606, 798 and 187 differentially...
Tipo: Text Palavras-chave: Pinctada margaritifera; Albinism; Pigmentation; RNA-seq; Notch signaling pathway; Tyrosinase; Biomineralization.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00652/76420/77477.pdf
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Low energy cost for cultured pearl formation in grafted chimeric Pinctada margaritifera ArchiMer
Le Moullac, Gilles; Soyez, Claude; Ky, Chin-long.
The pearl oyster is one of the rare animal models that support two distinct genomes,  through the surgical graft process operated for culture pearl production. This grafted  organism is assimilated to a chimera whose physiological functioning remains poorly known.  The question of the energy expenditure comparison between chimera and non-chimera  animals arises. To answer this question, grafted and non-grafted pearl oysters were  evaluated for their energetic needs by the indirect calorimetry method. This method made it  possible to measure the energy expenditure based on the respiration rate (RR)  measurement, reflecting the basal metabolism. The results showed that the RR values for  grafted and non-grafted pearl oysters were not significantly different...
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00437/54861/56350.pdf
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Development of cultured pearl circles and shape after initial graft and second nucleus insertion in the black-lipped pearl oyster Pinctada margaritifera ArchiMer
Ky, Chin-long; Demmer, Jonathan; Sham-koua, Manaarii; Cabral, Philippe.
Production of larger, rounder, high-quality cultured pearls with fewer circles is one of the main challenges of Pinctada margaritifera aquaculture faced by every pearl farm in French Polynesia. Although bigger pearl sizes can be achieved through surgreffe operations (implantation of a second nucleus following pearl harvest), control of the development of pearl circles and shapes still remains unclear, as illustrated by grafter’s empirical rules, where often the surgreffe process is only performed after production of uncircled and round pearl shapes. The present study was designed with a real pearl by pearl traceability to reveal for the first time the development of circles and shapes from graft and surgreffe, in relation to the size of the pearl sac. This...
Tipo: Text Palavras-chave: Pearl oyster; Pinctada margaritifera; Surgreffe; Circled pearls; Pearl shapes; Pearl sac.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00276/38690/37187.pdf
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Impact of spat shell colour selection in hatchery-produced Pinctada margaritifera on cultured pearl colour ArchiMer
Ky, Chin-long; Sham Koua, Manaarii; Le Moullac, Gilles.
Beaded cultured pearl farming is a lengthy aquaculture process, particularly when the pearl oysters are produced through a hatchery propagation system, and includes the key steps of artificial breeding, larval and spat rearing before graft operations can take place. Within its genus, Pinctada margaritifera has the ability to produce the widest range of pearl colours, thanks to the donor colour polymorphism of the inner shell, which is mainly responsible for colour transmission. As hatchery spat production in P. margaritifera leads to several colour phenotypes (at 3 months old), the aim of this study was to determine whether a relation exists between the colour of the donors as spat and the final pearl colour. In the experiment, which took place over a...
Tipo: Text Palavras-chave: Pinctada margaritifera; Phenotypes; Spat shell colour; Earlier selection; Pearl colour.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00418/52969/53895.pdf
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Colour plasticity in the shells and pearls of animal graft model Pinctada margaritifera assessed by HSV colour quantification ArchiMer
Stenger, Pierre-louis; Vidal-dupiol, Jeremie; Reisser, Celine; Planes, Serge; Ky, Chin-long.
The bivalve Pinctada margaritifera has the capacity to produce the most varied and colourful pearls in the world. Colour expression in the inner shell is under combined genetic and environmental control and is correlated with the colour of pearls produced when the same individual is used as a graft donor. One major limitation when studying colour phenotypes is grader subjectivity, which leads to inconsistent colour qualification and quantification. Through the use of HSV (Hue Saturation Value) colour space, we created an R package named ‘ImaginR’ to characterise inner shell colour variations in P. margaritifera. Using a machine-learning protocol with a training dataset, ImaginR was able to reassign individual oysters and pearls to predefined human-based...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00497/60900/64239.pdf
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Growth Performance Comparison of Pinctada margaritifera Juveniles Produced by Thermal Shock or Gonad Scarification Spawning Procedures ArchiMer
Ky, Chin-long; Lau, Christophe; Sham Koua, Manaarii; Lo, Cedrik.
The black-lipped pearl oyster Pinctada margaritifera is of high economic importance in French Polynesia. Arecent decline in pearl value led to the initiation of several genetic breeding programs aiming to improve production traits, including oyster shell growth, which dictates the time of grafting, size of the implanted nuclei, and biomineralization capacities. We assessed shell diameters on hatchery-produced spat to analyze juvenile growth performance of four half-sib families derived from polyandry (one dam crossed with two sires) and polygyny (two dams crossed with one sire) using gametes obtained by thermal shock or gonad scarification. Spat growth was monitored over 3 mo, with shell diameter measured weekly. Results revealed that the spawning method...
Tipo: Text Palavras-chave: Pearl oysters; Pinctada margaritifera; Juvenile; Growth performance; Spawning procedure.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00310/42167/41470.pdf
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Strong genetic isolation of the black-lipped pearl oyster (Pinctada margaritifera) in the Marquesas archipelago (French Polynesia) ArchiMer
Reisser, Celine; Lo, Cédrik; Schikorski, David; Sham Koua, Manaarii; Planes, Serge; Ky, Chin-long.
The French Polynesian islands are internationally known for their black pearls, produced by culture of the black lipped pearl oyster Pinctada margaritifera. The ongoing development of hatcheries for P. margaritifera in French Polynesia poses new challenges for the industry, particularly regarding the maintenance of genetic diversity in the hatchery stocks. This emphasizes the necessity to characterize the genetic diversity and differentiation within natural and exploited populations, to carefully select putative parental populations. The present study aimed at validating the phylogenetic status and investigating genetic attributes of populations from the only two non-exploited archipelagos of French Polynesia, the Marquesas archipelago, and the Australes...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00509/62059/66234.pdf
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Temperature and Food Influence Shell Growth and Mantle Gene Expression of Shell Matrix Proteins in the Pearl Oyster Pinctada margaritifera ArchiMer
Joubert, Caroline; Linard, Clementine; Le Moullac, Gilles; Soyez, Claude; Saulnier, Denis; Teaniniuraitemoana, Vaihiti; Ky, Chin-long; Gueguen, Yannick.
In this study, we analyzed the combined effect of microalgal concentration and temperature on the shell growth of the bivalve Pinctada margaritifera and the molecular mechanisms underlying this biomineralization process. Shell growth was measured after two months of rearing in experimental conditions, using calcein staining of the calcified structures. Molecular mechanisms were studied though the expression of 11 genes encoding proteins implicated in the biomineralization process, which was assessed in the mantle. We showed that shell growth is influenced by both microalgal concentration and temperature, and that these environmental factors also regulate the expression of most of the genes studied. Gene expression measurement of shell matrix protein...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00210/32095/30535.pdf
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Phenome of pearl quality traits in the mollusc transplant model Pinctada margaritifera ArchiMer
Ky, Chin-long; Quillien, Virgile; Broustal, Floriane; Soyez, Claude; Devaux, Dominique.
The bivalve Pinctada margaritifera exhibits three main transplant phenotypes derived from  the donor (from which a mantle graft tissue, the saibo, is excised), the recipient (into which  the saibo is implanted with a nucleus, leading to the formation of a pearl sac "chimera") and  the cultured pearls themselves. This first phenome study on the species derived from a large  experimental graft. Transplant phenotype was assessed at three scales: 1) macro, pearl size,  colour, grade, 2) micro, pearl surface microstructure, and 3) molecular, biomineralisation  gene expression level in saibo and pearl sac tissues. From donor to pearl, the phenome  revealed fine variations of quality traits dependent on the position on the mantle where the  saibo was cut, whose...
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Ano: 2018 URL: https://archimer.ifremer.fr/doc/00423/53419/54306.pdf
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The pearl oyster (Pinctada margaritifera) aquaculture in French Polynesia and the indirect impact of long-distance transfers and collection-culture site combinations on pearl quality traits ArchiMer
Ky, Chin-long; Broustal, Floriane; Potin, Dan; Lo, Cedrik.
In French Polynesia, the P. margaritifera pearl aquaculture industry is spread over a vast area, as large as Europe. All the oysters for this the highly economically important activity are supplied from just a few collection lagoons, but they are grown in numerous sites across three archipelagos (Gambier, Society and Tuamotu). Many oyster transfers thus indirectly bring about grafting combinations mixing different geographic origins and production sites. This study aims to examine the impact of such graft combinations on cultured pearl quality traits. For this, six homogeneous and standardised experimental graft combinations (N = 6197) were conducted at commercial scale in the two growing locations the most frequently used in French Polynesia: Arutua atoll...
Tipo: Text Palavras-chave: Pearl oyster; Pinctada margaritifera; Graft combinations; Pearl quality traits; Environment.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00477/58888/61444.pdf
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Genetic investigations on the caffeine and chlorogenic acid relationship in an interspecific cross between Coffea liberica dewevrei and C-pseudozanguebariae ArchiMer
Ky, Chin-long; Barre, Philippe; Noirot, Michel.
The objective of the paper was to identify the number of major loci explaining caffeine content in coffee seeds. Investigations were based on previously published results: (1) Caffeine binds to chlorogenic acids in a 1:1 molecular ratio; (2) Between species, the caffeine content is correlated to the chlorogenic acid content; (3) Only a part of chlorogenic acids is bound to caffeine. Especially, the content ratio between caffeine and chlorogenic acids varied between species. For identifying the number of major loci, a quantitative trait locus (QTL) approach was carried out using an interspecific cross between two highly differentiated species-Coffea liberica dewevrei and Coffea pseudozanguebariae, the latter being a caffeine-free species. As main finding,...
Tipo: Text Palavras-chave: Coffea; Chlorogenic acids; Caffeine; QTL; Interspecific cross.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00152/26298/24429.pdf
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Influence of Temperature and Pearl Rotation on Biomineralization in the Pearl Oyster Pinctada margaritifera ArchiMer
Le Moullac, Gilles; Schuck, Lucie; Chabrier, Sebastien; Belliard, Corinne; Lyonnard, Pierre; Broustal, Floriane; Soyez, Claude; Saulnier, Denis; Brahmi, Chloe; Ky, Chin-long; Beliaeff, Benoit.
The objective of this study was to observe the impact of temperature on pearl formation using  an integrative approach describing the rotation of the pearls, the rate of nacre deposition, the  thickness of the aragonite tablets and the biomineralizing potential of the pearl sac tissue  though the expression level of some key genes. Fifty pearl oysters were grafted with  magnetized nuclei to allow the rotation of the pearls to be described. Four months later, 32 of  these pearl oysters were exposed to four temperatures (22, 26, 30 and 34°C) for 2 weeks.  Results showed that the rotation speed differed according to the movement direction: pearls  with axial movement (AM) had a significantly higher rotation speed than those with random  movement (RM). Pearl...
Tipo: Text Palavras-chave: Magnetometer; Rotation speed; Nacre growth; Nacre thickness; Gene expression; Pmarg-Pif177.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00450/56196/57753.pdf
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Crossing phenotype heritability and candidate gene expression in grafted black-lipped pearl oyster Pinctada margaritifera, an animal chimera ArchiMer
Blay, Carole; Planes, Serge; Ky, Chin-long.
Grafting mantle tissue of a donor pearl oyster into the gonad of a recipient oyster results in the formation of a chimera, the pearl sac. The phenotypic variations of this chimera are hypothesized to be the result of interactions between the donor and recipient genomes. In this study, the heritability of phenotypic variation and its association with gene expression were investigated for the first time during P. margaritifera pearl production. Genetic variance was evaluated at different levels, 1) before the graft operation (expression in graft tissue), 2) after grafting (pearl sac tissue expression in chimera) and 3) on the product of the graft (pearl phenotype traits) based on controlled bi-parental crosses and the F1 generation. Donor related genetic...
Tipo: Text Palavras-chave: Gene expression; Heritability; Pearl oyster; Phenotype; Pinctada margaritifera.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00433/54505/55876.pdf
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Cultured Pearl Surface Quality Profiling by the Shell Matrix Protein Gene Expression in the Biomineralised Pearl Sac Tissue of Pinctada margaritifera ArchiMer
Blay, Carole; Planes, Serge; Ky, Chin-long.
Nucleated pearls are produced by molluscs of the Pinctada genus through the biomineralisation activity of the pearl sac tissue within the recipient oyster. The pearl sac originates from graft tissue taken from the donor oyster mantle and its functioning is crucial in determining key factors that impact pearl quality surface characteristics. The specific role of related gene regulation during gem biogenesis was unknown, so we analysed the expression profiles of eight genes encoding nacreous (PIF, MSI60, PERL1) or prismatic (SHEM5, PRISM, ASP, SHEM9) shell matrix proteins or both (CALC1) in the pearl sac (N = 211) of Pinctada margaritifera during pearl biogenesis. The pearls and pearl sacs analysed were from a uniform experimental graft with sequential...
Tipo: Text Palavras-chave: Biomineralisation; Relative gene expression; Pearl sac; Biomarkers; Pearl quality; Pinctada margaritifera.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00435/54622/56022.pdf
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Environmentally Driven Color Variation in the Pearl Oyster Pinctada margaritifera var. cumingii (Linnaeus, 1758) Is Associated With Differential Methylation of CpGs in Pigment- and Biomineralization-Related Genes ArchiMer
Stenger, Pierre-louis; Ky, Chin-long; Reisser, Celine; Cosseau, Céline; Grunau, Christoph; Mege, Mickael; Planes, Serge; Vidal-dupiol, Jeremie.
Today, it is common knowledge that environmental factors can change the color of many animals. Studies have shown that the molecular mechanisms underlying such modifications could involve epigenetic factors. Since 2013, the pearl oyster Pinctada margaritifera var. cumingii has become a biological model for questions on color expression and variation in Mollusca. A previous study reported color plasticity in response to water depth variation, specifically a general darkening of the nacre color at greater depth. However, the molecular mechanisms behind this plasticity are still unknown. In this paper, we investigate the possible implication of epigenetic factors controlling shell color variation through a depth variation experiment associated with a DNA...
Tipo: Text Palavras-chave: Pearl oyster; Environmental pressure; Depth; Color change; Pigmentation; DNA methylation; Methylome characterization.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00685/79667/82436.pdf
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Influence of grafter skill and season on cultured pearl shape, circles and rejects in Pinctada margaritifera aquaculture in Mangareva lagoon ArchiMer
Ky, Chin-long; Nakasai, Seiji; Molinari, Nicolas; Devaux, Dominique.
Cultured pearls quality produced by the mollusc Pinctada margaritifera var. cumingi is determined by a panel of criteria, of which shape is one of the most relevant. Cultured pearls with round and semi-round (RS) shapes are the most valuable. Decreasing the proportion of other pearl shapes (OT: baroque, button, drop, oval), and especially the circled pearls (CL) and rejects (rebuts: RT), is an important challenge for the pearl industry. The present study examined the effect of grafter skill and season of graft on the variation in proportions of CL, RS, OT and RT cultured pearl shape categories in a mono-site culture (Mangareva island lagoon). Six large-scale grafting experiments, carried out in the same way as commercial grafting sessions, were made by...
Tipo: Text Palavras-chave: Pinctada margaritifera; Cultured pearl; Grafter skill; Pearl shapes; Circled pearls; Grafting season.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00216/32745/31150.pdf
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